Downloading PubChem raw data using rsync
PubChem raw data is hosted on the NCBI servers which provide convenient access using rsync.
Download PubChem data using a rsync command like
example.sh
rsync -Pav ftp.ncbi.nlm.nih.gov::pubchem/Compound/CURRENT-Full/SDF/\*.gz pubchem/This example command will download all current compounds in SDF format.
You can explore the PubChem directory structure by accessing the NCBI FTP server using your browser.
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