Publications

Bachelor’s Thesis (2015)

Topic: Algorithms for resource-constrained domain-specific knowledge management

Thesis
Corresponding GitHub repository with all source code
Final presentation

GOBI Lab (2014)

Topic: Efficient all-against-all protein similarity matrix computation using OpenCL

Full report (48 pages)
Final presentation

Notable reports of two-week projects:

Functional classification, introducing GOText interactive gene ontology search

Note that the original presentation contained showcase images of CPUs, FPGAs and GPUs on slide 5. Because of their unclear license, we didn’t include them here.

Hauptseminar (2013)

Topic: Phylogenomic inference

Full report (10 pages)
Final presentation
Corresponding GitHub repository with all source code

Proseminar (2012)

Topic: Textkompression: Burrows-Wheeler-Kompression (in german)

Full report (6 pages)
Final presentation
Corresponding GitHub repository with all source code

Content license

Note that all content on the Publications page (i.e. all the PDFs linked on this page) is hereby published under CCBYNCSA 3.0. For other licensing, please contact us.

All data — as well as source code — is available as open data or open source respectively. However, we didn’t have time to properly publish anything yet, so please feel free to contact us to request data and/or source code.

Luckily, anything here (so far) has been made using LaTeX.